{ "_id": "6a14071facfb0bcc41d3998d", "Package": "UpDown", "Type": "Package", "Title": "Detecting Group Disturbances from Longitudinal Observations", "Version": "1.2.3", "Description": "Provides an algorithm to detect and characterize\ndisturbances (start, end dates, intensity) that can occur at\ndifferent hierarchical levels by studying the dynamics of\nlongitudinal observations at the unit level and group level\nbased on Nadaraya-Watson's smoothing curves, but also a shiny\napp which allows to visualize the observations and the detected\ndisturbances. Finally the package provides a dataframe\nmimicking a pig farming system subsected to disturbances\nsimulated according to Le et al.(2022)\n.", "Authors@R": "c(\nperson(\"Tom\", \"Rohmer\",, \"tom.rohmer@inrae.fr\", role = c(\"aut\", \"cre\")),\nperson(\"Vincent\", \"Le\",, \"giang-nam.le@inrae.fr\", role = \"aut\"),\nperson(\"Ingrid\", \"David\",, \"Ingrid.david@inrae.fr\",role = \"aut\")\n)", "License": "GPL (>=3)", "Encoding": "UTF-8", "LazyDataCompression": "xz", "LazyData": "true", "Author": "Tom Rohmer [aut, cre], Vincent Le [aut], Ingrid David [aut]", "Maintainer": "Tom Rohmer ", "RoxygenNote": "7.3.2", "Config/pak/sysreqs": "cmake make libicu-dev libuv1-dev libssl-dev\nzlib1g-dev", "Repository": "https://tomrohmer.r-universe.dev", "Date/Publication": "2025-08-28 13:47:44 UTC", "RemoteUrl": "https://github.com/tomrohmer/updown", "RemoteRef": "HEAD", "RemoteSha": "3d8f71042ded9460992fe67ac0eaddc01f8369ab", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-25 08:20:02 UTC", "User": "root" }, "MD5sum": "4a02a8be9a529b384498a0e4da3c66df", "_user": "tomrohmer", "_type": "src", "_file": "UpDown_1.2.3.tar.gz", "_fileid": "3f4024e1c46412df278452c8457e67e1e32c11d4888ecec0ceca60cb56868ccf", "_filesize": 2011545, "_sha256": "3f4024e1c46412df278452c8457e67e1e32c11d4888ecec0ceca60cb56868ccf", "_created": "2026-05-25T08:20:02.000Z", "_published": "2026-05-25T08:23:59.387Z", "_distro": "noble", "_jobs": [ { "job": 77680023502, "time": 158, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7194503143" }, { "job": 77680023543, "time": 174, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7194506742" }, { "job": 77680023481, "time": 169, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7194500324" }, { "job": 77680023505, "time": 190, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7194498350" }, { "job": 77679607659, "time": 203, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7194464443" }, { "job": 77680023447, "time": 126, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7194495002" }, { "job": 77680023517, "time": 123, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7194494319" }, { "job": 77680023529, "time": 118, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7194493105" }, { "job": 77680023492, "time": 152, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7194502361" } ], "_buildurl": "https://github.com/r-universe/tomrohmer/actions/runs/26390733728", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/tomrohmer/updown", "_commit": { "id": "3d8f71042ded9460992fe67ac0eaddc01f8369ab", "author": "Tom Rohmer ", "committer": "Tom Rohmer ", "message": "link anchors\n", "time": 1756388864 }, "_maintainer": { "name": "Tom Rohmer", "email": "tom.rohmer@inrae.fr", "login": "tomrohmer", "description": "", "uuid": 130745239 }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.0.0", "role": "Depends" }, { "package": "stats", "role": "Imports" }, { "package": "mixtools", "role": "Imports" }, { "package": "mclust", "role": "Imports" }, { "package": "dplyr", "role": "Imports" }, { "package": "tidyr", "role": "Imports" }, { "package": "ggplot2", "role": "Imports" }, { "package": "shiny", "role": "Imports" } ], "_owner": "tomrohmer", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-35", "n": 2 } ], "_tags": [], "_stars": 1, "_contributors": [ { "user": "tomrohmer", "count": 18, "uuid": 130745239 } ], "_userbio": { "uuid": 130745239, "type": "user", "name": "TomRohmer" }, "_downloads": { "count": 174, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/UpDown" }, "_devurl": "https://github.com/tomrohmer/updown", "_searchresults": 1, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/readme.html", "extra/readme.md", "extra/UpDown.html", "manual.pdf" ], "_homeurl": "https://github.com/tomrohmer/updown", "_realowner": "tomrohmer", "_cranurl": true, "_releases": [ { "version": "1.2.1", "date": "2023-07-20" }, { "version": "1.2.3", "date": "2025-08-28" } ], "_exports": [ "UpDown", "UpDownApp" ], "_datasets": [ { "name": "PigDisturbance", "title": "Non-observable information about the disturbances occuring in the 'PigFarming' dataset", "object": "PigDisturbance", "class": [ "data.frame" ], "fields": [ "id", "batch", "pen", "int_batch", "start_batch", "end_batch", "int_pen", "start_pen", "end_pen", "int_ind", "start_ind", "end_ind" ], "rows": 6000, "table": true, "tojson": true }, { "name": "PigFarming", "title": "Simulated longitudinal phenotypes that mimics a pig-farming dataset subsected to disturbances", "object": "PigFarming", "class": [ "data.frame" ], "fields": [ "id", "batch", "pen", "age", "time", "weight" ], "rows": 578847, "table": true, "tojson": true } ], "_help": [ { "page": "PigDisturbance", "title": "Non-observable information about the disturbances occuring in the 'PigFarming' dataset", "topics": [ "PigDisturbance" ] }, { "page": "PigFarming", "title": "Simulated longitudinal phenotypes that mimics a pig-farming dataset subsected to disturbances", "topics": [ "PigFarming" ] }, { "page": "UpDown", "title": "Unsupervised hierarchical classification for elastic or plastic response to a disturbance using mixture of Gaussian distributions", "topics": [ "UpDown" ] }, { "page": "UpDownApp", "title": "Shiny app to vizualise the longitudinal intra-group observations and the detected disturbances", "topics": [ "UpDownApp" ] } ], "_readme": "https://github.com/tomrohmer/updown/raw/HEAD/README.md", "_rundeps": [ "askpass", "base64enc", "bslib", "cachem", "cli", "commonmark", "cpp11", "crosstalk", "curl", "data.table", "digest", "dplyr", "evaluate", "farver", "fastmap", "fontawesome", "fs", "generics", "ggplot2", "glue", "gtable", "highr", "htmltools", "htmlwidgets", "httpuv", "httr", "isoband", "jquerylib", "jsonlite", "kernlab", "knitr", "labeling", "later", "lattice", "lazyeval", "lifecycle", "magrittr", "MASS", "Matrix", "mclust", "memoise", "mime", "mixtools", "nlme", "openssl", "otel", "pillar", "pkgconfig", "plotly", "promises", "purrr", "R6", "rappdirs", "RColorBrewer", "Rcpp", "rlang", "rmarkdown", "S7", "sass", "scales", "segmented", "shiny", "sourcetools", "stringi", "stringr", "survival", "sys", "tibble", "tidyr", "tidyselect", "tinytex", "utf8", "vctrs", "viridisLite", "withr", "xfun", "xtable", "yaml" ], "_score": 2.6989700043360187, "_indexed": true, "_nocasepkg": "updown", "_universes": [ "tomrohmer" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.2.3", "date": "2026-05-25T08:22:15.000Z", "distro": "noble", "commit": "3d8f71042ded9460992fe67ac0eaddc01f8369ab", "fileid": "fda10d6ba84886d5ac36a8e9628139948f0ab00da9ec63f2887808a6192fc55a", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/tomrohmer/actions/runs/26390733728" }, { "r": "4.6.0", "os": "linux", "version": "1.2.3", "date": "2026-05-25T08:22:28.000Z", "distro": "noble", "commit": "3d8f71042ded9460992fe67ac0eaddc01f8369ab", "fileid": "9cea19d6e4fccde36063d60c04c4e3207961cfc09d119584661a51a9ac9c0975", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/tomrohmer/actions/runs/26390733728" }, { "r": "4.5.3", "os": "mac", "version": "1.2.3", "date": "2026-05-25T08:22:18.000Z", "commit": "3d8f71042ded9460992fe67ac0eaddc01f8369ab", "fileid": "42455a5ff6a40a975005040462d5f6dd1371dfdcd7bb4cf75ec78c73aa5aa374", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/tomrohmer/actions/runs/26390733728" }, { "r": "4.6.0", "os": "mac", "version": "1.2.3", "date": "2026-05-25T08:22:04.000Z", "commit": "3d8f71042ded9460992fe67ac0eaddc01f8369ab", "fileid": "f2120115d643541febf0a9a8e93887eb8ae77bb3493b9bb5dadd6879b3933bc3", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/tomrohmer/actions/runs/26390733728" }, { "r": "4.6.0", "os": "wasm", "version": "1.2.3", "date": "2026-05-25T08:22:31.000Z", "commit": "3d8f71042ded9460992fe67ac0eaddc01f8369ab", "fileid": "213c179af7d6ef50edb7425698ea1e51ec0c2d8ab1a8fa7261978677cc9a54c7", "status": "success", "buildurl": "https://github.com/r-universe/tomrohmer/actions/runs/26390733728" }, { "r": "4.7.0", "os": "win", "version": "1.2.3", "date": "2026-05-25T08:21:29.000Z", "commit": "3d8f71042ded9460992fe67ac0eaddc01f8369ab", "fileid": "40fb817510777e216f9acaba7cf51adb367805824ddf3473696b01bab057386f", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/tomrohmer/actions/runs/26390733728" }, { "r": "4.5.3", "os": "win", "version": "1.2.3", "date": "2026-05-25T08:21:25.000Z", "commit": "3d8f71042ded9460992fe67ac0eaddc01f8369ab", "fileid": "fa3d14477d698a157260661eff15f2ffce707522a4e7feb5411312d0693b8a2b", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/tomrohmer/actions/runs/26390733728" }, { "r": "4.6.0", "os": "win", "version": "1.2.3", "date": "2026-05-25T08:22:03.000Z", "commit": "3d8f71042ded9460992fe67ac0eaddc01f8369ab", "fileid": "78c7bdec054775921f31718d53157185a172cd047651b9ae7a7b5502a6091abb", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/tomrohmer/actions/runs/26390733728" } ] }