Package: UpDown 1.2.3

UpDown: Detecting Group Disturbances from Longitudinal Observations

Provides an algorithm to detect and characterize disturbances (start, end dates, intensity) that can occur at different hierarchical levels by studying the dynamics of longitudinal observations at the unit level and group level based on Nadaraya-Watson's smoothing curves, but also a shiny app which allows to visualize the observations and the detected disturbances. Finally the package provides a dataframe mimicking a pig farming system subsected to disturbances simulated according to Le et al.(2022) <doi:10.1016/j.animal.2022.100496>.

Authors:Tom Rohmer [aut, cre], Vincent Le [aut], Ingrid David [aut]

UpDown_1.2.3.tar.gz
UpDown_1.2.3.zip(r-4.7)UpDown_1.2.3.zip(r-4.6)UpDown_1.2.3.zip(r-4.5)
UpDown_1.2.3.tgz(r-4.6-any)UpDown_1.2.3.tgz(r-4.5-any)
UpDown_1.2.3.tar.gz(r-4.7-any)UpDown_1.2.3.tar.gz(r-4.6-any)
UpDown_1.2.3.tgz(r-4.6-emscripten)
manual.pdf |manual.html
card.svg |card.png
UpDown/json (API)

# Install 'UpDown' in R:
install.packages('UpDown', repos = c('https://tomrohmer.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/tomrohmer/updown/issues

Datasets:
  • PigDisturbance - Non-observable information about the disturbances occuring in the 'PigFarming' dataset
  • PigFarming - Simulated longitudinal phenotypes that mimics a pig-farming dataset subsected to disturbances

On CRAN:

Conda:

2.70 score 1 stars 1 scripts 174 downloads 2 exports 78 dependencies

Last updated from:3d8f71042d. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK158
source / vignettesOK203
linux-release-x86_64OK174
macos-release-arm64OK190
macos-oldrel-arm64OK169
windows-develOK123
windows-releaseOK152
windows-oldrelOK118
wasm-releaseOK126

Exports:UpDownUpDownApp

Dependencies:askpassbase64encbslibcachemclicommonmarkcpp11crosstalkcurldata.tabledigestdplyrevaluatefarverfastmapfontawesomefsgenericsggplot2gluegtablehighrhtmltoolshtmlwidgetshttpuvhttrisobandjquerylibjsonlitekernlabknitrlabelinglaterlatticelazyevallifecyclemagrittrMASSMatrixmclustmemoisemimemixtoolsnlmeopensslotelpillarpkgconfigplotlypromisespurrrR6rappdirsRColorBrewerRcpprlangrmarkdownS7sassscalessegmentedshinysourcetoolsstringistringrsurvivalsystibbletidyrtidyselecttinytexutf8vctrsviridisLitewithrxfunxtableyaml