Package: UpDown 1.2.2

UpDown: Detecting Group Disturbances from Longitudinal Observations

Provides an algorithm to detect and characterize disturbances (start, end dates, intensity) that can occur at different hierarchical levels by studying the dynamics of longitudinal observations at the unit level and group level based on Nadaraya-Watson's smoothing curves, but also a shiny app which allows to visualize the observations and the detected disturbances. Finally the package provides a dataframe mimicking a pig farming system subsected to disturbances simulated according to Le et al.(2022) <doi:10.1016/j.animal.2022.100496>.

Authors:Tom Rohmer [aut, cre], Vincent Le [aut], Ingrid David [aut]

UpDown_1.2.2.tar.gz
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UpDown_1.2.2.tgz(r-4.4-any)UpDown_1.2.2.tgz(r-4.3-any)
UpDown_1.2.2.tar.gz(r-4.5-noble)UpDown_1.2.2.tar.gz(r-4.4-noble)
UpDown_1.2.2.tgz(r-4.4-emscripten)UpDown_1.2.2.tgz(r-4.3-emscripten)
UpDown.pdf |UpDown.html
UpDown/json (API)

# Install 'UpDown' in R:
install.packages('UpDown', repos = c('https://tomrohmer.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/tomrohmer/updown/issues

Datasets:
  • PigDisturbance - Non-observable information about the disturbances occuring in the 'PigFarming' dataset
  • PigFarming - Simulated longitudinal phenotypes that mimics a pig-farming dataset subsected to disturbances

On CRAN:

2 exports 0.73 score 81 dependencies 1 scripts 164 downloads

Last updated 9 months agofrom:314aadea4a. Checks:OK: 5 NOTE: 2. Indexed: yes.

TargetResultDate
Doc / VignettesOKSep 09 2024
R-4.5-winNOTESep 09 2024
R-4.5-linuxNOTESep 09 2024
R-4.4-winOKSep 09 2024
R-4.4-macOKSep 09 2024
R-4.3-winOKSep 09 2024
R-4.3-macOKSep 09 2024

Exports:UpDownUpDownApp

Dependencies:askpassbase64encbslibcachemclicolorspacecommonmarkcpp11crayoncrosstalkcurldata.tabledigestdplyrevaluatefansifarverfastmapfontawesomefsgenericsggplot2gluegtablehighrhtmltoolshtmlwidgetshttpuvhttrisobandjquerylibjsonlitekernlabknitrlabelinglaterlatticelazyevallifecyclemagrittrMASSMatrixmclustmemoisemgcvmimemixtoolsmunsellnlmeopensslpillarpkgconfigplotlypromisespurrrR6rappdirsRColorBrewerRcpprlangrmarkdownsassscalessegmentedshinysourcetoolsstringistringrsurvivalsystibbletidyrtidyselecttinytexutf8vctrsviridisLitewithrxfunxtableyaml